Animal Breeding Notes

• Unibreed Models
• Multibreed Models
• Genomic Models

Genomic Models

• CHAPTER 01: Framework, Concepts, and General Background. (.pdf 106KB)
• CHAPTER 02: Polygenic-Genomic Models with Complete Genotype Information.
  (.pdf 1.58MB)
  • a.     SAS IML Inputs
    • 1. Phenotypes and gene contents (.csv 1KB)
    • 2. Allele frequencies (.csv 2KB)
  • b. SAS IML Programs
    • 1. Polygenic Genetic Evaluation Model (.sas 45KB)
    • 2. Polygenic-Genomic Model with a single fixed marker locus effect (.sas 45KB)
    • 3. Polygenic-Genomic Model with a small number of fixed marker locus effects (.sas 45KB)
    • 4. Polygenic-Genomic Model with a small number of random marker locus effects (.sas 45KB)
    • 5. Polygenic-Genomic Marker Model with a large number of random marker locus effects (.sas 45KB)
    • 6. Polygenic-Genomic Animal Model with a large number of random marker locus effects (.sas 83KB)
  • c. SAS IML Outputs
    • 1. Polygenic Genetic Evaluation Model (html)
    • 2. Polygenic-Genomic Model with a single fixed marker locus effect (html)
    • 3. Polygenic-Genomic Model with a small number of fixed marker locus effects (html)
    • 4. Polygenic-Genomic Model with a small number of random marker locus effects (html)
    • 5. Polygenic-Genomic Marker Model with a large number of random marker locus effects (html)
    • 6. Polygenic-Genomic Animal Model with a large number of random marker locus effects (html)
• CHAPTER 03: Polygenic-Genomic Models with Incomplete Genotype Information.
  (.pdf 1.85MB)
  • a. SAS IML Inputs
    • 1. Phenotypes and gene contents (.csv 3KB)
    • 2. Allele frequencies (.csv 2KB)
  • b. SAS IML Programs
    • 1. Polygenic Model (.sas 83KB)
    • 2. Polygenic-Genomic Marker Model with actual and predicted genotypes (.sas 83KB)
    • 3. Polygenic-Genomic Animal Model with actual and predicted genotypes (.sas 83KB)
    • 4. Polygenic-Genomic Model with phenotypic, pedigree, and genotypic information (.sas 83KB)
  • c. SAS IML Outputs
    • 1. Polygenic Model (.html)
    • 2. Polygenic-Genomic Marker Model with actual and predicted genotypes (.html)
    • 3. Polygenic-Genomic Animal Model with actual and predicted genotypes (.html)
    • 4. Polygenic-Genomic Model with phenotypic, pedigree, and genotypic information (.html)

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