Animal Breeding Notes

• Unibreed Models
• Multibreed Models
• Genomic Models

Unibreed Models

• CHAPTER 01: Definitions and Elementary Matrix Operations (.pdf 198KB)
• CHAPTER 02: Linear Dependence, Matrix Inverses, and Consistency of Linear Equations. (.pdf 248KB)
• CHAPTER 03: Eigenvalues, Eigenvectors, and Diagonalization of a Square Matrix. (.pdf 247KB)
• CHAPTER 04: Definite Matrices. (.pdf 197KB)
• CHAPTER 05: Differential Calculus in Matrix Notation. (.pdf 134KB)
• CHAPTER 06: Distribution Functions of Random Variables. (.pdf 200KB)
• CHAPTER 07: Expectation and Covariances of Random Variables and Random Vectors. (.pdf 418KB)
• CHAPTER 08: Best Prediction. (.pdf 277KB)
• CHAPTER 09: Best Linear Prediction. (.pdf 162KB)
• CHAPTER 10: Best Linear Unbiased Prediction. (.pdf 370KB)
• CHAPTER 11: The Mixed Linear Model. (.pdf 387KB)
• CHAPTER 12: Estimation, Estimability and Solving the Mixed Model Equations When They Are Not Full-Rank. (.pdf 285KB)
• CHAPTER 13: Genetic Covariances Between Individuals. (.pdf 156KB)
• CHAPTER 14: The Matrix of Additive Relationships And Its Inverse. (.pdf 517KB)
• CHAPTER 15: Sire-Maternal Grandsire Approximation to the Matrix off Additive Relationships and it's Inverse. (.pdf 224KB)
• CHAPTER 16: Animal and Reduced Animal Models. (.pdf 401KB)
• CHAPTER 17: Approximations to the Animal Model. (.pdf 312KB)
• CHAPTER 18: Repeatability Models. (.pdf 302KB)
• CHAPTER 19: Direct and Maternal Genetic Effects Models. (.pdf 189KB)
  • a. SAS IML Program (.pdf 21KB)
  • b. SAS IML Output (.mht)
• CHAPTER 20: Additive Genetic Group Models. (.pdf 276KB)
  • a. SAS IML Programs
    • 1. SAGM (.pdf 75KB)
    • 2. AAGM (.pdf 78KB)
  • b. SAS IML Outputs
    • 1. SAGM (.mht)
    • 2. AAGM (.mht)
• CHAPTER 21: Multiple Trait Models (.pdf 340KB)
  • a. SAS IML Programs
    • 1. MTSMM (.pdf 77KM)
    • 2. MTAM (.pdf 80KB)
  • b. SAS IML Outputs
    • 1. MTSMM (.mht)
    • 2. MTAM (.mht)

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